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PDBsum entry 4xw5

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Top Page protein ligands metals Protein-protein interface(s) links
Transferase PDB id
4xw5
Contents
Protein chains
337 a.a.
20 a.a.
Ligands
ATP
Metals
_CA ×2
Waters ×333

References listed in PDB file
Key reference
Title Phosphoryl transfer reaction snapshots in crystals: insights into the mechanism of protein kinase a catalytic subunit.
Authors O.Gerlits, J.Tian, A.Das, P.Langan, W.T.Heller, A.Kovalevsky.
Ref. J Biol Chem, 2015, 290, 15538-15548. [DOI no: 10.1074/jbc.M115.643213]
PubMed id 25925954
Abstract
To study the catalytic mechanism of phosphorylation catalyzed by cAMP-dependent protein kinase (PKA) a structure of the enzyme-substrate complex representing the Michaelis complex is of specific interest as it can shed light on the structure of the transition state. However, all previous crystal structures of the Michaelis complex mimics of the PKA catalytic subunit (PKAc) were obtained with either peptide inhibitors or ATP analogs. Here we utilized Ca(2+) ions and sulfur in place of the nucleophilic oxygen in a 20-residue pseudo-substrate peptide (CP20) and ATP to produce a close mimic of the Michaelis complex. In the ternary reactant complex, the thiol group of Cys-21 of the peptide is facing Asp-166 and the sulfur atom is positioned for an in-line phosphoryl transfer. Replacement of Ca(2+) cations with Mg(2+) ions resulted in a complex with trapped products of ATP hydrolysis: phosphate ion and ADP. The present structural results in combination with the previously reported structures of the transition state mimic and phosphorylated product complexes complete the snapshots of the phosphoryl transfer reaction by PKAc, providing us with the most thorough picture of the catalytic mechanism to date.
PROCHECK
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