spacer
spacer

PDBsum entry 4xr8

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4xr8 calculated with MOLE 2.0 PDB id
4xr8
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.58 1.86 42.2 -1.33 -0.31 19.7 75 5 4 6 4 3 0 1  
2 1.45 1.80 45.3 -1.55 -0.32 21.6 78 7 3 6 4 3 0 1  
3 1.19 1.19 47.2 -1.53 -0.36 24.4 79 7 6 4 4 3 0 0  EDO 203 F
4 1.58 1.85 47.8 -1.43 -0.44 14.0 75 4 3 7 3 4 1 0  
5 1.18 1.18 50.2 -1.85 -0.41 26.9 82 9 5 4 4 3 0 0  EDO 203 F
6 1.46 1.80 50.8 -1.63 -0.43 15.5 78 6 2 7 3 4 1 0  
7 1.39 1.40 51.1 -1.77 -0.38 22.1 75 5 6 4 5 3 1 0  
8 1.38 1.39 54.1 -1.96 -0.40 23.2 78 7 5 5 5 3 1 0  
9 1.29 1.45 16.1 -0.51 -0.11 13.7 85 2 0 2 2 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer