spacer
spacer

PDBsum entry 4xqo

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4xqo calculated with MOLE 2.0 PDB id
4xqo
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.68 5.54 44.9 -0.13 -0.16 4.2 96 0 2 9 7 2 0 0  
2 2.18 4.67 47.5 -0.45 -0.20 6.3 94 1 2 9 7 1 0 0  
3 2.18 4.69 51.5 -0.44 -0.13 8.5 88 1 4 7 6 3 0 0  
4 1.37 5.95 52.4 -1.88 -0.38 25.7 74 9 6 5 9 1 0 0  
5 3.45 3.66 54.9 -0.45 -0.25 5.4 97 0 1 12 9 2 0 0  
6 1.27 1.48 56.1 -2.19 -0.38 25.0 75 6 5 2 1 5 1 1  
7 2.48 3.14 56.3 -0.66 -0.21 7.7 91 0 3 10 8 3 0 0  
8 3.46 3.67 58.0 -0.41 -0.16 6.5 91 0 3 10 7 4 0 0  
9 1.32 1.43 99.3 -0.98 -0.37 16.7 80 5 8 5 8 3 0 0  
10 1.35 1.43 113.5 -1.80 -0.34 24.4 77 8 9 6 11 2 0 0  
11 1.37 1.42 181.6 -1.65 -0.47 20.2 82 10 15 14 10 4 1 0  
12 1.61 1.62 182.2 -1.61 -0.47 19.5 83 12 14 15 10 4 1 0  
13 1.36 6.13 196.6 -2.08 -0.45 24.2 81 15 16 16 12 3 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer