spacer
spacer

PDBsum entry 4xn9

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 4xn9 calculated with MOLE 2.0 PDB id
4xn9
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.39 58.5 -1.44 -0.33 17.2 79 5 4 5 6 3 2 0  
2 1.26 1.39 61.8 -1.17 -0.33 14.8 84 5 4 8 7 2 1 0  
3 1.26 1.39 63.6 -0.89 -0.22 14.8 88 4 4 8 8 2 0 0  
4 1.26 1.39 76.4 -1.63 -0.35 22.9 78 7 6 4 8 3 1 0  
5 1.17 2.35 16.8 1.08 0.16 11.5 84 1 2 0 5 1 0 1  
6 1.24 2.39 21.3 0.58 -0.04 12.7 87 0 3 2 5 1 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer