PDBsum entry 4xmx

Pore analysis for: 4xmx calculated with

MOLE 2.0

PDB id

4xmx

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.41

40.7

-2.50

-0.60

27.9

79

6

4

3

0

2

1

0

GOL 912 A

2

1.80

2.13

48.0

-0.47

-0.06

17.1

87

6

3

5

10

0

0

0

MLI 915 A MLI 917 A MLI 919 A MLI 922 A

3

2.22

2.39

48.6

-0.36

-0.16

14.2

94

4

3

6

11

0

2

0

MLI 915 A MLI 917 A MLI 922 A

4

1.13

1.38

57.0

-1.90

-0.30

21.0

86

8

5

8

4

1

0

0

MLI 919 A

5

1.66

1.75

57.9

-1.32

-0.21

18.2

80

9

3

5

6

2

2

0

MLI 919 A

6

1.81

2.13

58.6

-0.45

-0.14

15.1

87

6

4

6

11

0

2

0

MLI 917 A MLI 919 A

7

1.15

2.29

71.7

-0.78

-0.30

16.1

78

3

7

4

7

3

0

1

NA 905 A MLI 924 A

8

1.14

1.37

75.3

-2.53

-0.53

24.3

83

8

10

10

3

3

1

0

BES 902 A MLI 921 A

9

1.51

1.67

76.4

-1.69

-0.33

21.8

84

7

8

8

7

3

1

0

BES 902 A MLI 915 A MLI 917 A MLI 921 A MLI 922 A

10

1.52

1.79

77.9

-2.14

-0.45

23.1

79

7

7

7

4

4

3

0

BES 902 A MLI 921 A

11

1.50

1.68

80.8

-1.76

-0.32

21.6

81

9

8

8

6

3

1

0

BES 902 A MLI 919 A MLI 921 A

12

1.54

1.80

81.5

-1.52

-0.35

19.2

84

8

8

8

10

3

3

0

BES 902 A MLI 917 A MLI 921 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.