 |
PDBsum entry 4xdc
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4xdc calculated with MOLE 2.0
|
PDB id
|
|
|
|
4xdc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Tunnels calculated on whole structure |
 |
Tunnels calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
5 tunnels,
coloured by tunnel radius |
 |
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in list below
|
|
|
 |
 |
 |
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.30 |
1.60 |
28.0 |
1.44 |
0.36 |
6.1 |
69 |
 |
2 |
0 |
0 |
6 |
0 |
1 |
4 |
 |
SF4 604 B
|
 |
 |
2 |
 |
1.37 |
1.46 |
22.3 |
-2.51 |
-0.59 |
25.3 |
86 |
4 |
4 |
3 |
1 |
0 |
0 |
1 |
|
 |
3 |
 |
1.36 |
1.46 |
22.4 |
-2.52 |
-0.44 |
28.4 |
81 |
4 |
2 |
3 |
1 |
0 |
0 |
1 |
|
 |
4 |
 |
1.55 |
2.15 |
15.0 |
-2.00 |
-0.66 |
23.2 |
77 |
3 |
1 |
1 |
0 |
1 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |