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PDBsum entry 4x9e

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 4x9e calculated with MOLE 2.0 PDB id
4x9e
Pores calculated on whole structure Pores calculated excluding ligands

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29 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.42 1.84 27.8 -1.22 -0.13 21.4 83 5 3 3 2 1 0 0  
2 1.40 1.78 28.8 -1.15 -0.14 22.5 80 5 4 2 2 1 0 0  
3 2.66 2.66 37.9 -2.36 -0.68 25.7 79 5 5 2 1 1 2 0  
4 2.22 2.30 39.2 -2.04 -0.50 25.9 86 8 3 1 1 1 1 0  
5 3.29 3.48 45.8 -2.96 -0.51 34.5 83 9 4 3 1 1 1 0  
6 1.52 1.83 47.6 -1.55 -0.57 19.7 86 8 2 2 4 1 1 0  
7 2.14 2.32 51.9 -2.73 -0.72 26.6 77 4 6 4 1 2 3 0  
8 2.40 2.42 60.9 -2.60 -0.65 27.5 79 5 6 4 2 2 3 0  
9 1.45 1.50 67.8 -1.78 -0.40 23.3 84 8 2 2 3 1 0 0  
10 1.33 1.38 71.0 -1.83 -0.20 23.4 84 11 4 4 6 3 0 0  
11 3.08 4.66 74.3 -2.86 -0.51 33.2 83 15 9 5 2 2 1 0  
12 2.00 2.24 80.2 -1.38 -0.48 14.2 84 7 2 5 2 2 1 0  
13 3.00 4.66 85.0 -3.39 -0.61 36.2 82 16 12 5 1 2 2 0  
14 1.36 3.44 97.9 -3.06 -0.63 30.5 82 16 9 8 2 2 2 0  
15 3.67 4.68 101.2 -3.03 -0.61 30.6 80 16 9 6 1 2 2 0  
16 2.69 3.11 101.9 -2.92 -0.44 35.5 80 23 6 4 1 3 2 0  
17 1.43 1.52 102.1 -2.70 -0.57 28.9 81 15 10 6 2 3 2 0  
18 3.10 4.65 106.7 -2.18 -0.43 25.5 84 16 10 7 3 4 1 0  
19 1.38 3.38 113.8 -3.08 -0.75 34.1 84 18 15 8 0 2 1 0  
20 1.26 2.37 114.7 -1.41 -0.50 14.8 84 8 3 3 4 2 0 0  
21 3.27 3.47 133.9 -2.20 -0.43 25.4 82 18 9 8 4 4 3 0  
22 3.22 3.35 147.7 -2.27 -0.48 25.4 80 19 11 8 3 4 5 0  
23 1.45 1.79 145.3 -2.43 -0.41 28.4 83 18 9 11 3 4 3 0  
24 1.37 3.57 157.0 -2.63 -0.54 29.8 83 21 11 9 2 4 3 0  
25 1.56 1.89 158.8 -2.16 -0.30 28.0 82 22 8 10 4 3 1 0  
26 2.42 2.61 163.0 -2.43 -0.54 25.6 81 20 12 12 4 4 4 0  DC 1 G DC 2 G
27 2.84 4.03 170.1 -2.13 -0.44 25.8 83 18 11 6 6 4 2 0  
28 3.24 3.41 171.2 -2.41 -0.48 26.2 79 17 11 7 6 4 4 0  
29 1.37 3.38 181.6 -2.05 -0.52 26.0 86 15 10 11 4 0 1 0  DC 1 H
30 3.03 3.97 200.2 -2.26 -0.47 26.3 80 22 12 7 6 4 4 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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