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PDBsum entry 4x4r

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4x4r calculated with MOLE 2.0 PDB id
4x4r
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 1.24 29.5 -1.17 -0.65 12.4 87 2 3 3 1 1 0 0  APC 501 A A 35 B C 36 B C 37 B
2 1.23 1.43 33.2 -0.72 -0.36 12.8 90 3 1 2 3 1 0 0  APC 501 A G 1 B C 31 B C 33 B C 34 B A 35 B C 37 B
3 1.12 2.73 16.4 -0.65 -0.10 23.3 84 2 2 1 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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