PDBsum entry 4uuj Go to PDB code:  Tunnel analysis for: 4uuj calculated with MOLE 2.0 PDB id 4uuj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.78 17.5 -0.31 0.27 19.1 77 3 3 1 5 1 0 0   2 1.17 1.42 23.4 0.75 0.47 10.3 76 2 2 0 6 2 0 0   3 1.51 3.15 26.2 -1.89 0.21 23.6 67 2 2 0 1 4 1 0   4 1.87 3.82 18.3 -0.17 -0.36 6.0 95 1 0 4 3 0 0 0   5 1.25 1.46 18.3 0.51 -0.30 1.9 94 0 0 4 2 1 0 0   6 1.37 1.40 23.1 -0.16 -0.42 5.1 93 1 0 5 3 1 0 0   7 1.26 1.32 16.9 0.32 -0.19 4.5 78 1 0 0 5 0 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.