PDBsum entry 4u3f Go to PDB code:  Pore analysis for: 4u3f calculated with MOLE 2.0 PDB id 4u3f Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.95 1.95 29.2 -0.78 -0.18 13.1 84 3 0 2 5 1 1 0   2 2.59 2.62 30.4 -1.11 0.01 21.2 77 6 2 1 2 1 3 1  HEC 501 D 3 2.56 2.56 35.5 -1.78 -0.38 21.1 80 5 3 2 1 0 2 0   4 2.67 5.15 36.9 -1.62 -0.15 24.5 77 6 3 1 3 1 3 0   5 2.47 3.01 45.6 -1.84 -0.37 25.0 82 6 5 3 4 2 0 0   6 3.42 4.70 47.7 -1.16 -0.33 18.1 83 5 4 1 4 1 1 0   7 2.19 2.17 51.0 -1.81 -0.52 15.2 83 5 3 5 2 2 3 0  UNK 43 I UNK 44 I 8 3.57 4.25 53.2 -2.40 -0.54 26.9 76 7 4 2 2 1 2 0  UNK 44 I 9 2.14 2.46 55.6 -0.73 -0.04 17.6 78 6 3 2 6 2 4 1  HEC 501 D 10 2.46 3.01 78.6 -2.56 -0.55 28.0 78 12 5 4 4 1 2 0  UNK 44 I 11 1.19 1.31 89.6 0.40 0.25 15.4 83 5 5 3 19 3 0 0  PEE 509 C PEE 401 P U10 405 P CDL 502 Q CDL 101 T 12 1.19 1.32 89.4 -1.09 -0.21 20.5 78 12 6 3 7 1 4 0  UNK 41 V UNK 42 V 13 1.37 1.48 100.9 -0.83 -0.21 19.2 77 10 10 3 8 3 2 0  UNK 40 V UNK 41 V UNK 42 V UNK 43 V 14 2.36 2.37 100.6 -1.21 -0.38 19.0 79 10 9 4 7 3 4 0  UNK 40 V UNK 41 V UNK 42 V UNK 43 V 15 1.26 1.37 102.4 0.05 0.24 12.6 79 6 3 5 15 7 0 1  PEE 501 N PEE 401 P U10 405 P BOG 406 P CDL 502 Q PEE 502 R CDL 101 T 16 1.65 1.91 108.6 -1.26 -0.43 19.8 82 10 7 10 12 3 4 0  PEE 507 C PEE 411 P 17 1.18 1.29 108.1 0.51 0.32 12.3 82 8 2 4 23 2 2 0  PEE 509 C UNK 44 I PEE 401 P U10 405 P CDL 502 Q CDL 101 T 18 3.06 5.45 112.0 -1.27 -0.35 20.1 82 8 7 9 9 1 5 0  PEE 411 P 19 1.67 1.92 114.7 -1.15 -0.26 20.2 82 10 8 12 9 3 3 0  PEE 411 P 20 1.26 1.26 114.3 0.71 0.43 12.8 78 6 6 1 24 7 1 0  Y52 503 C PEE 509 C PEE 410 P 21 1.70 1.97 115.9 -1.22 -0.29 19.9 80 12 10 9 10 4 6 1  PEE 507 C HEC 501 D PEE 411 P 22 1.47 1.46 119.4 -2.16 -0.47 25.6 77 18 7 4 7 1 4 0  UNK 41 I UNK 41 V UNK 42 V 23 3.00 3.17 121.6 -1.16 -0.22 18.8 79 10 9 10 8 3 9 1  PEE 507 C HEC 501 D PEE 411 P 24 1.42 1.56 130.9 -1.67 -0.41 23.2 77 16 11 5 9 3 2 0  UNK 41 I UNK 40 V UNK 41 V UNK 42 V UNK 43 V 25 2.14 2.24 130.5 -2.07 -0.58 23.3 79 16 10 7 7 3 4 0  UNK 41 I UNK 40 V UNK 41 V UNK 42 V UNK 43 V 26 2.89 4.80 132.7 -0.73 -0.01 15.4 75 10 7 7 13 7 7 0  PEE 407 P PEE 411 P HEC 501 Q CDL 502 Q CDL 101 T 27 1.27 1.33 138.6 0.22 0.32 14.4 79 13 3 4 23 5 2 0  U10 504 C PEE 505 C PEE 510 C CDL 502 D CDL 101 G UNK 44 I 28 2.69 5.36 145.3 -0.64 0.03 13.0 73 13 8 9 16 8 10 1  PEE 507 C HEC 501 D PEE 407 P PEE 411 P HEC 501 Q CDL 502 Q CDL 101 T 29 1.21 1.30 166.7 -0.16 0.19 15.0 79 16 5 5 26 5 4 0  FME 1 C U10 504 C PEE 505 C PEE 510 C CDL 502 D CDL 101 G 30 1.97 3.79 206.0 -0.31 -0.07 14.9 81 15 11 11 33 5 3 0  PEE 507 C BOG 503 D PEE 502 E PEE 503 E PEE 410 P PEE 411 P Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.