PDBsum entry 4ttp

Tunnel analysis for: 4ttp calculated with

MOLE 2.0

PDB id

4ttp

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

4 tunnels, coloured by tunnel radius

4 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.22

1.26

27.9

1.33

0.40

9.9

79

3

2

1

8

0

1

1

2

1.22

1.26

30.8

-0.35

0.18

24.4

77

5

1

0

10

0

1

1

3

1.22

1.27

33.5

0.24

0.22

16.7

79

3

2

1

10

0

1

1

4

1.23

1.26

40.5

0.50

0.22

11.1

74

3

1

2

12

0

2

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.