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PDBsum entry 4roc

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 4roc calculated with MOLE 2.0 PDB id
4roc
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.06 4.06 28.2 -0.53 -0.83 4.5 103 0 1 2 0 0 0 0  DA 5 N DA 6 N DG 7 N DG 8 N DG 9 N DC 10 N DT 13
T DT 14 T DT 15 T DT 16 T DA 17 T DA 18 T DG 19 T
DC 20 T
2 1.58 1.58 37.2 -0.51 -0.48 4.6 78 2 0 3 4 1 0 0  DT 3 N DG 4 N DA 5 N DA 6 N DG 19 T
3 2.86 4.04 38.2 -1.62 -0.68 18.3 79 3 0 0 0 0 0 0  DG 9 N DC 10 N DT 11 N DT 12 N DA 13 N DA 14 N DA
15 N DA 16 N MG 101 N DA 8 T DC 9 T DC 10 T DT 11
T DA 12 T DT 13 T DT 14 T
4 2.75 2.74 72.1 -1.34 -0.68 16.8 85 5 2 2 1 0 0 0  DT 11 N DT 12 N DA 13 N DA 14 N DA 15 N DG 20 N
DT 21 N DG 22 N MG 101 N DA 8 T DC 9 T DC 10 T DT
11 T
5 2.14 3.43 87.8 -0.71 -0.51 11.9 80 2 4 4 7 2 1 0  DC 10 N DT 11 N DT 12 N DA 13 N DA 14 N DA 15 N
MG 101 N DA 8 T DC 9 T DC 10 T DT 11 T DC 21 T DC
22 T
6 1.61 1.61 91.2 -0.60 -0.56 11.6 79 5 3 3 6 1 0 0  DT 3 N DG 4 N DC 10 N DT 11 N DT 12 N DA 13 N DA
14 N DA 15 N MG 101 N DA 8 T DC 9 T DC 10 T DT 11
T DC 21 T DC 22 T DT 23 T
7 1.58 1.67 104.7 -0.53 -0.56 10.1 80 4 3 4 6 1 0 0  DT 3 N DG 4 N DC 10 N DT 11 N DG 20 N DT 21 N DG
22 N DC 10 T DT 11 T DC 21 T DC 22 T DT 23 T
8 1.24 1.24 26.8 -1.49 -0.60 13.2 89 3 0 3 1 1 0 0  DG 24 N DA 25 N DC 26 N DA 27 N DG 28 N DC 5 T DA
6 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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