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PDBsum entry 4rd5

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4rd5 calculated with MOLE 2.0 PDB id
4rd5
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 1 pore, coloured by radius 1 pore, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.37 2.30 71.0 -0.22 -0.43 7.3 74 1 2 1 2 1 0 0  DA 5 E DA 6 E DG 7 E DC 8 E DG 9 E DG 10 E DT 29
F DA 30 F DG 31 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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