PDBsum entry 4q3c

Pore analysis for: 4q3c calculated with

MOLE 2.0

PDB id

4q3c

Pores calculated on whole structure

Pores calculated excluding ligands

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4 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.29

1.29

28.7

-1.10

-0.09

19.5

76

4

1

2

4

1

0

0

GOL 906 A

2

1.33

1.34

40.9

-1.17

-0.33

19.3

76

5

2

1

5

2

0

0

GOL 906 A

3

2.41

2.69

42.4

-1.19

-0.44

11.4

81

0

6

1

4

1

5

1

NAD 901 B

4

1.29

1.29

52.2

-1.91

-0.36

20.8

75

6

3

4

4

3

0

0

GOL 906 A EDO 909 A EDO 910 A

5

1.75

1.71

56.0

-1.30

-0.35

14.1

81

3

4

2

5

1

5

1

NAD 901 B

6

1.73

1.70

58.6

-1.61

-0.41

18.4

83

3

5

1

4

0

4

0

NAD 901 B NAD 901 C

7

1.75

1.90

83.1

-1.46

-0.41

17.1

84

2

9

4

10

1

5

1

NAD 901 C

8

1.75

1.90

83.8

-1.54

-0.48

20.8

87

2

11

3

8

0

4

0

NAD 901 C

9

2.74

2.99

30.1

-0.95

-0.31

11.8

83

1

5

0

5

0

4

0

NAD 901 A NAD 901 D

10

1.53

1.53

48.8

-0.96

-0.41

16.7

81

3

4

1

6

0

1

1

GOL 905 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.