 |
PDBsum entry 4pmd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4pmd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4pmd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 tunnels,
coloured by tunnel radius |
|
5 tunnels,
coloured by
tunnel radius
|
5 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.15 |
1.26 |
26.2 |
-1.22 |
-0.10 |
16.3 |
69 |
|
3 |
1 |
3 |
0 |
6 |
1 |
0 |
|
|
 |
|
2 |
 |
1.15 |
1.27 |
29.2 |
-1.22 |
-0.18 |
18.2 |
74 |
6 |
1 |
3 |
0 |
5 |
1 |
0 |
|
|
3 |
 |
1.14 |
1.26 |
41.0 |
-1.26 |
-0.37 |
14.3 |
78 |
3 |
2 |
3 |
1 |
3 |
1 |
0 |
|
|
4 |
 |
1.38 |
1.40 |
15.2 |
-0.75 |
-0.09 |
15.1 |
76 |
2 |
1 |
1 |
3 |
1 |
1 |
0 |
|
 |
5 |
 |
1.02 |
1.64 |
17.2 |
-0.92 |
0.18 |
20.6 |
66 |
3 |
3 |
0 |
3 |
3 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program