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PDBsum entry 4pec
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Tunnel analysis for: 4pec calculated with  MOLE 2.0
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PDB id
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4pec
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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15 tunnels,
coloured by
tunnel radius
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15 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.37 |
1.37 |
81.6 |
-0.82 |
-0.70 |
8.4 |
84 |
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3 |
0 |
2 |
1 |
0 |
0 |
0 |
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A 470 A A 471 A A 572 A A 574 A U 576 A G 577 A G
578 A G 579 A U 1255 A G 1256 A G 1259 A A 1260 A
C 1261 A A 2015 A U 2016 A U 2017 A G 2018 A G
2029 A A 2031 A G 2032 A A 2033 A U 2034 A G 2035
A C 2055 A G 2057 A A 2058 A A 2059 A A 2453 A C
2499 A U 2504 A A 2572 A MG 3014 A MG 3015 A MG
3071 A MG 3081 A
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2 |
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1.15 |
1.15 |
109.5 |
-0.41 |
-0.80 |
3.3 |
107 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 572 A A 574 A A 979 A A 1001 A G 1002 A G 1003
A G 1025 A G 1026 A A 1129 A U 1130 A A 1134 A C
1145 A C 1146 A A 1147 A U 1148 A C 1150 A G 2024
A C 2025 A U 2026 A G 2027 A U 2028 A G 2029 A A
2031 A G 2032 A A 2033 A U 2034 A G 2035 A G 2053
A A 2054 A C 2055 A A 2453 A G 2455 A C 2456 A U
2457 A G 2490 A C 2499 A U 2504 A A 2572 A U 2617
A MG 3059 A MG 3060 A MG 3071 A MG 3119 A MG 3148
A G 86 B U 87 B C 88 B
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3 |
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1.44 |
1.44 |
117.6 |
-0.97 |
-0.76 |
9.3 |
88 |
4 |
0 |
1 |
0 |
0 |
0 |
0 |
MHW 1 6 DBB 3 6 MHU 5 6 MHV 6 6 004 7 6 MHT 8 6 A
572 A A 574 A U 576 A G 577 A G 578 A U 1255 A G
1256 A A 2015 A U 2016 A U 2017 A G 2018 A G 2029
A A 2031 A G 2032 A A 2033 A U 2034 A G 2035 A C
2055 A G 2057 A A 2058 A A 2059 A G 2061 A A 2062
A A 2451 A C 2452 A A 2453 A U 2493 A G 2494 A C
2499 A A 2503 A U 2504 A G 2505 A U 2506 A A 2572
A C 2573 A U 2584 A U 2585 A A 2602 A C 2611 A MG
3014 A MG 3015 A MG 3071 A MG 3081 A MG 3101 A
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4 |
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1.45 |
1.45 |
126.1 |
-0.95 |
-0.78 |
6.6 |
81 |
4 |
0 |
3 |
0 |
0 |
1 |
0 |
A 529 A A 572 A A 574 A A 2020 A C 2021 A U 2022
A C 2023 A G 2029 A A 2031 A G 2032 A A 2033 A U
2034 A G 2035 A A 2042 A C 2043 A C 2044 A C 2045
A A 2054 A C 2055 A A 2453 A C 2499 A U 2504 A A
2572 A U 2615 A C 2616 A U 2617 A G 2618 A C 2619
A C 2620 A U 2622 A G 2623 A G 2624 A G 2627 A G
2633 A A 2634 A C 2774 A G 2775 A A 2776 A G 2777
A A 2778 A A 2810 A G 2811 A G 2812 A A 2813 A C
2827 A G 2828 A A 2829 A A 2886 A MG 3071 A MG
3081 A
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5 |
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1.36 |
1.36 |
123.5 |
-0.82 |
-0.79 |
5.3 |
78 |
2 |
0 |
2 |
0 |
0 |
1 |
0 |
U 3 A U 4 A A 5 A A 529 A A 572 A A 574 A A 2020
A C 2021 A U 2022 A C 2023 A G 2029 A A 2031 A G
2032 A A 2033 A U 2034 A G 2035 A A 2042 A C 2043
A C 2044 A C 2045 A A 2054 A C 2055 A A 2453 A C
2499 A U 2504 A A 2572 A U 2615 A C 2616 A U 2617
A G 2618 A C 2619 A C 2620 A U 2622 A G 2623 A G
2624 A G 2627 A C 2628 A U 2629 A G 2630 A A 2632
A G 2633 A A 2634 A A 2635 A C 2636 A C 2774 A G
2775 A A 2776 A G 2777 A A 2778 A G 2782 A U 2783
A U 2784 A C 2785 A U 2786 A C 2787 A C 2827 A MG
3071 A MG 3081 A
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6 |
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1.37 |
1.37 |
126.9 |
-1.12 |
-0.76 |
9.2 |
79 |
4 |
0 |
2 |
0 |
0 |
1 |
0 |
A 529 A A 572 A A 574 A A 2020 A C 2021 A U 2022
A C 2023 A G 2029 A A 2031 A G 2032 A A 2033 A U
2034 A G 2035 A A 2042 A C 2043 A C 2044 A C 2045
A A 2054 A C 2055 A A 2453 A C 2499 A U 2504 A A
2572 A U 2615 A C 2616 A U 2617 A G 2618 A C 2619
A C 2620 A U 2622 A G 2623 A G 2624 A A 2634 A A
2635 A C 2636 A U 2637 A G 2638 A G 2770 A C 2771
A C 2772 A C 2773 A C 2774 A G 2775 A A 2776 A G
2777 A A 2778 A C 2827 A MG 3071 A MG 3081 A
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7 |
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1.37 |
1.37 |
135.9 |
-0.94 |
-0.73 |
7.0 |
85 |
3 |
1 |
4 |
2 |
0 |
1 |
0 |
C 16 A G 17 A G 524 A U 525 A G 533 A U 534 A G
535 A G 536 A A 547 A G 548 A G 549 A C 550 A G
551 A U 552 A G 553 A U 554 A G 555 A A 556 A A
572 A A 574 A A 2020 A C 2021 A U 2022 A G 2029 A
A 2031 A G 2032 A A 2033 A U 2034 A G 2035 A C
2044 A C 2045 A A 2054 A C 2055 A A 2453 A C 2499
A U 2504 A A 2572 A U 2615 A C 2616 A U 2617 A MG
3071 A MG 3081 A
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8 |
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1.56 |
1.56 |
151.1 |
-0.88 |
-0.71 |
8.4 |
79 |
5 |
0 |
1 |
0 |
1 |
0 |
0 |
A 572 A A 574 A U 576 A G 577 A G 578 A A 676 A A
677 A C 678 A C 679 A C 680 A G 681 A G 682 A U
683 A A 751 A U 773 A G 774 A G 775 A G 776 A A
789 A U 790 A A 794 A C 795 A C 796 A G 798 A U
1255 A G 1256 A C 1357 A G 1358 A A 1359 A G 1360
A G 1364 A A 1367 A G 1368 A G 1369 A A 2015 A U
2016 A U 2017 A G 2018 A G 2029 A A 2031 A G 2032
A A 2033 A U 2034 A G 2035 A C 2055 A G 2057 A A
2058 A A 2059 A A 2453 A C 2499 A U 2504 A A 2572
A MG 3014 A MG 3015 A MG 3025 A MG 3071 A MG 3081
A MG 3090 A
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9 |
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1.43 |
1.43 |
160.3 |
-0.97 |
-0.75 |
9.5 |
88 |
4 |
0 |
1 |
0 |
0 |
0 |
0 |
MHW 1 6 MHU 5 6 MHV 6 6 004 7 6 MHT 8 6 A 572 A A
574 A U 576 A G 577 A G 578 A A 742 A G 745 A U
746 A A 752 A U 1255 A G 1256 A A 1672 A G 1673 A
C 1675 A A 1690 A C 1691 A U 1765 A G 1766 A G
1767 A C 1768 A U 1769 A A 1977 A A 1978 A U 1979
A G 1980 A U 1982 A G 1983 A G 1984 A C 1985 A A
2015 A U 2016 A U 2017 A G 2018 A G 2029 A A 2031
A G 2032 A A 2033 A U 2034 A G 2035 A C 2055 A G
2057 A A 2058 A A 2059 A A 2062 A A 2453 A C 2499
A U 2504 A A 2572 A G 2581 A G 2582 A G 2607 A G
2608 A U 2609 A C 2610 A MG 3014 A MG 3015 A MG
3071 A MG 3081 A MG 3160 A
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10 |
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1.49 |
1.49 |
169.5 |
-0.98 |
-0.75 |
9.8 |
87 |
4 |
1 |
1 |
0 |
0 |
0 |
0 |
MHW 1 6 MHU 5 6 MHV 6 6 004 7 6 MHT 8 6 A 572 A A
574 A U 576 A G 577 A G 578 A A 735 A A 739 A G
745 A U 746 A A 752 A A 753 A U 754 A U 755 A A
756 A G 757 A U 1255 A G 1256 A A 1274 A C 1298 A
G 1299 A A 1301 A A 1302 A G 1620 A U 1636 A A
1637 A G 1661 A A 1678 A A 1679 A U 1680 A G 1681
A C 1761 A A 1762 A U 1991 A A 2015 A U 2016 A U
2017 A G 2018 A G 2029 A A 2031 A G 2032 A A 2033
A U 2034 A G 2035 A C 2055 A G 2057 A A 2058 A A
2059 A A 2062 A A 2453 A C 2499 A U 2504 A A 2572
A U 2609 A C 2712 A C 2716 A C 2717 A MG 3014 A
MG 3015 A MG 3020 A MG 3052 A MG 3071 A MG 3081 A
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11 |
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1.22 |
1.33 |
26.0 |
1.77 |
0.55 |
9.0 |
91 |
2 |
0 |
0 |
8 |
1 |
0 |
0 |
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12 |
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1.21 |
1.67 |
38.8 |
2.60 |
0.66 |
4.4 |
90 |
1 |
0 |
0 |
8 |
0 |
0 |
0 |
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13 |
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1.14 |
1.83 |
20.0 |
0.98 |
0.36 |
6.0 |
83 |
1 |
0 |
1 |
3 |
1 |
0 |
0 |
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14 |
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1.21 |
1.41 |
17.1 |
2.83 |
0.73 |
4.2 |
83 |
0 |
1 |
0 |
6 |
0 |
0 |
0 |
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15 |
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1.20 |
1.42 |
18.0 |
2.75 |
0.72 |
4.3 |
83 |
0 |
1 |
0 |
6 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program