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PDBsum entry 4osm

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4osm calculated with MOLE 2.0 PDB id
4osm
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.69 1.69 74.5 -2.28 -0.71 17.0 92 5 3 9 2 0 0 0  DT 10 G DA -14 H DG -13 H DA -12 H DG -11 H DA -
10 H DG -9 H DA -8 H DT -7 H DA -6 H DA -5 H DA -
4 H
2 1.27 1.41 77.0 0.01 -0.27 6.5 78 2 2 4 10 0 1 1  DT 12 I DC 13 I DT 14 I DA -14 J DG -11 J DA -10 J
3 1.71 1.71 77.5 -2.40 -0.72 25.9 81 10 6 5 2 0 0 0  DG -1 I DT 0 I DA -6 J DA -5 J DA -4 J DG -
3 J DG -2 J
4 1.64 1.65 88.7 -1.94 -0.81 8.9 90 5 2 11 2 0 0 0  DA -10 H DG -9 H DA -8 H DT -7 H DA -6 H DA -
5 H DA -4 H DC 13 I DT 14 I DG -11 J DA -10 J DG -
9 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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