PDBsum entry 4oge

Tunnel analysis for: 4oge calculated with

MOLE 2.0

PDB id

4oge

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.13

1.29

39.0

-1.40

-0.34

16.7

88

4

0

2

6

1

1

0

2

1.12

1.28

47.2

-0.16

-0.20

9.0

86

4

2

2

10

2

1

0

3

1.13

1.29

48.1

-1.99

-0.30

26.0

85

9

2

4

5

2

0

0

4

1.16

1.28

49.3

-1.83

-0.34

24.3

86

6

3

4

6

2

1

0

5

1.13

1.28

54.5

-2.25

-0.50

31.5

87

8

6

3

6

1

0

0

6

1.16

1.29

68.6

-0.48

-0.24

11.4

88

7

2

3

11

2

1

0

7

1.12

1.28

71.2

-2.15

-0.56

25.6

87

7

7

5

4

1

0

0

8

1.14

1.15

36.4

0.31

0.02

14.1

83

4

3

1

8

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.