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PDBsum entry 4o4l

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protein ligands metals Protein-protein interface(s) links
Cell cycle/inhibitor PDB id
4o4l

 

 

 

 

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Contents
Protein chains
439 a.a.
428 a.a.
123 a.a.
351 a.a.
Ligands
GTP ×2
GDP ×2
POU ×2
_EP ×2
MES
Metals
_CA ×3
_MG ×4
Waters ×561
PDB id:
4o4l
Name: Cell cycle/inhibitor
Title: Tubulin-peloruside a-epothilone a complex
Structure: Tubulin alpha-1b chain. Chain: a, c. Synonym: alpha-tubulin ubiquitous, tubulin k-alpha-1, tubulin alpha- ubiquitous chain. Tubulin beta-2b chain. Chain: b, d. Stathmin-4. Chain: e. Fragment: unp residues 49-189.
Source: Bos taurus. Bovine,cow,domestic cattle,domestic cow. Organism_taxid: 9913. Other_details: brain. Rattus norvegicus. Rat. Organism_taxid: 10116. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.20Å     R-factor:   0.188     R-free:   0.224
Authors: A.E.Prota,K.Bargsten,P.T.Northcote,M.Marsh,K.H.Altmann,J.H.Miller, J.F.Diaz,M.O.Steinmetz
Key ref: A.E.Prota et al. (2014). Structural basis of microtubule stabilization by laulimalide and peloruside A. Angew Chem Int Ed Engl, 53, 1621-1625. PubMed id: 24470331 DOI: 10.1002/anie.201307749
Date:
18-Dec-13     Release date:   26-Mar-14    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P81947  (TBA1B_BOVIN) -  Tubulin alpha-1B chain from Bos taurus
Seq:
Struc:
451 a.a.
439 a.a.
Protein chains
Pfam   ArchSchema ?
Q6B856  (TBB2B_BOVIN) -  Tubulin beta-2B chain from Bos taurus
Seq:
Struc:
445 a.a.
428 a.a.
Protein chain
Pfam   ArchSchema ?
P63043  (STMN4_RAT) -  Stathmin-4 from Rattus norvegicus
Seq:
Struc:
189 a.a.
123 a.a.
Protein chain
E1BQ43  (E1BQ43_CHICK) - 
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1002/anie.201307749 Angew Chem Int Ed Engl 53:1621-1625 (2014)
PubMed id: 24470331  
 
 
Structural basis of microtubule stabilization by laulimalide and peloruside A.
A.E.Prota, K.Bargsten, P.T.Northcote, M.Marsh, K.H.Altmann, J.H.Miller, J.F.Díaz, M.O.Steinmetz.
 
  ABSTRACT  
 
Laulimalide and peloruside A are microtubule-stabilizing agents (MSAs), the mechanism of action on microtubules of which is poorly defined. Here, using X-ray crystallography it is shown that laulimalide and peloruside A bind to a unique non-taxane site on β-tubulin and use their respective macrolide core structures to interact with a second tubulin dimer across protofilaments. At the same time, they allosterically stabilize the taxane-site M-loop that establishes lateral tubulin contacts in microtubules. Structures of ternary complexes of tubulin with laulimalide/peloruside A and epothilone A are also solved, and a crosstalk between the laulimalide/peloruside and taxane sites via the M-loop of β-tubulin is found. Together, the data define the mechanism of action of laulimalide and peloruside A on tubulin and microtubules. The data further provide a structural framework for understanding the synergy observed between two classes of MSAs in tubulin assembly and the inhibition of cancer cell growth.
 

 

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