PDBsum entry 4nos

Pore analysis for: 4nos calculated with

MOLE 2.0

PDB id

4nos

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.69

1.70

31.1

-1.75

-0.31

20.9

77

5

4

1

2

1

1

0

2

1.43

1.64

50.2

0.40

-0.01

6.3

80

4

2

4

11

0

2

3

3

1.14

1.33

64.6

-0.98

-0.19

17.0

79

7

3

3

8

3

1

0

4

1.24

1.37

107.7

-1.18

0.04

20.1

74

12

8

3

10

8

3

0

HEM 510 A H2B 511 A HEM 1010 B H4B 1011 B

5

1.21

1.29

111.3

-0.86

0.07

15.9

74

11

8

4

14

10

3

0

HEM 510 A H2B 511 A HEM 1010 B H4B 1011 B

6

1.22

1.53

39.0

-1.51

-0.19

22.0

73

4

1

2

3

2

1

0

7

1.96

2.18

43.3

-0.43

0.09

12.3

77

2

3

2

9

3

0

1

HEM 3010 D ITU 3012 D

8

1.47

1.65

43.5

0.07

0.25

9.3

83

1

3

3

8

2

0

1

HEM 2010 C ITU 2012 C

9

1.18

1.30

59.0

-0.02

0.30

10.2

73

4

4

2

9

6

2

1

HEM 2010 C H4B 2011 C HEM 3010 D H4B 3011 D

10

1.18

1.32

65.8

-0.65

0.21

14.9

72

7

6

2

7

7

2

0

HEM 2010 C H4B 2011 C HEM 3010 D H4B 3011 D

11

1.35

1.54

92.8

0.17

-0.01

10.1

81

5

3

4

12

0

3

4

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.