PDBsum entry 4nii Go to PDB code:  Tunnel analysis for: 4nii calculated with MOLE 2.0 PDB id 4nii Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 2.29 32.6 -0.12 0.18 9.9 81 3 2 4 6 4 0 0  MN 301 A AKG 302 A DT 5 B DA 6 B 6MA 8 B 2 1.34 2.20 44.0 -0.58 0.10 13.3 78 5 2 4 5 5 0 0  MN 301 A AKG 302 A DT 5 B DA 6 B DA 7 B 6MA 8 B D A 7 C DT 8 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.