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PDBsum entry 4ngt

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Hydrolase/hydrolase inhibitor PDB id
4ngt
Contents
Protein chain
692 a.a.
Ligands
NAG-NAG
NAG-NAG-BMA
NAG ×4
J42
Metals
_ZN ×2
_CL
_CA
_NA
Waters ×285

References listed in PDB file
Key reference
Title Rational design of urea-Based glutamate carboxypeptidase ii (gcpii) inhibitors as versatile tools for specific drug targeting and delivery.
Authors J.Tykvart, J.Schimer, J.Bařinková, P.Pachl, L.Poštová-Slavětínská, P.Majer, J.Konvalinka, P.ŠÁcha.
Ref. Bioorg Med Chem, 2014, 22, 4099-4108. [DOI no: 10.1016/j.bmc.2014.05.061]
PubMed id 24954515
Abstract
Glutamate carboxypeptidase II (GCPII), also known as prostate specific membrane antigen (PSMA), is an established prostate cancer marker and is considered a promising target for specific anticancer drug delivery. Low-molecular-weight inhibitors of GCPII are advantageous specific ligands for this purpose. However, they must be modified with a linker to enable connection of the ligand with an imaging molecule, anticancer drug, and/or nanocarrier. Here, we describe a structure-activity relationship (SAR) study of GCPII inhibitors with linkers suitable for imaging and drug delivery. Structure-assisted inhibitor design and targeting of a specific GCPII exosite resulted in a 7-fold improvement in Ki value compared to the parent structure. X-ray structural analysis of the inhibitor series led to the identification of several inhibitor binding modes. We also optimized the length of the inhibitor linker for effective attachment to a biotin-binding molecule and showed that the optimized inhibitor could be used to target nanoparticles to cells expressing GCPII.
PROCHECK
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