PDBsum entry 4n4j

Pore analysis for: 4n4j calculated with

MOLE 2.0

PDB id

4n4j

Pores calculated on whole structure

Pores calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 pores, coloured by radius

6 pores, coloured by radius

6 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.10

4.17

27.4

-0.52

0.24

16.4

74

3

2

1

3

3

2

1

HG1 605 A HG1 606 A HEC 612 A

2

1.33

1.33

29.8

-0.85

0.04

10.5

75

2

0

4

1

3

0

1

HEC 609 A

3

1.34

1.34

45.4

0.19

0.51

13.3

73

7

1

2

5

3

1

3

HEC 609 A HEC 610 A HEC 611 A

4

1.70

1.90

49.2

-0.18

0.32

20.2

71

8

2

1

5

2

1

6

HEC 609 A HEC 610 A HEC 611 A

5

1.60

3.99

50.9

0.15

0.46

16.3

73

6

1

1

5

3

1

4

HEC 610 A HEC 611 A HEC 612 A

6

2.00

2.18

52.6

-0.19

0.29

10.3

82

4

1

3

4

3

0

1

HEC 609 A HEC 610 A HEC 612 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.