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PDBsum entry 4myd

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4myd calculated with MOLE 2.0 PDB id
4myd
Pores calculated on whole structure Pores calculated excluding ligands

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0 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.61 2.66 46.5 -1.06 0.16 18.6 71 6 4 3 4 6 1 0  164 301 A
2 1.60 3.46 51.4 -1.29 -0.20 14.3 75 5 5 6 3 5 1 0  164 301 A
3 1.63 3.53 65.2 -1.33 -0.15 18.2 72 8 5 5 4 6 2 0  164 301 A
4 1.25 1.20 74.7 -0.75 -0.13 12.5 75 7 5 7 6 7 1 0  164 301 A
5 1.60 3.55 36.2 -1.19 0.05 14.7 73 4 2 5 3 5 1 0  164 301 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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