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PDBsum entry 4mlr

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4mlr calculated with MOLE 2.0 PDB id
4mlr
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.45 1.47 39.3 -0.08 0.00 9.8 84 3 3 3 7 4 0 0  KPI 166 A LYS 301 A
2 1.53 1.57 42.1 -0.43 -0.07 12.2 86 3 4 3 7 4 0 0  KPI 166 C LYS 301 C
3 1.52 1.59 43.0 -0.45 -0.03 13.3 86 4 3 3 7 4 0 0  KPI 166 B LYS 301 B LYS 301 C
4 1.55 1.55 55.5 -0.56 -0.20 11.7 89 3 3 7 7 3 0 0  LYS 301 A LYS 302 A KPI 166 D
5 1.68 2.17 82.5 -1.86 -0.77 15.6 88 4 4 12 0 2 0 0  GOL 304 C
6 1.59 1.60 86.9 -0.82 -0.21 14.6 87 6 5 8 7 4 0 0  KPI 166 B LYS 301 B LYS 301 C GOL 304 C
7 1.47 1.47 36.1 0.37 0.14 6.6 84 3 2 4 7 4 0 0  KPI 166 H LYS 301 H
8 1.33 1.44 47.4 -0.62 -0.11 15.3 85 5 5 4 7 4 0 0  KPI 166 G LYS 301 G
9 1.42 1.43 38.4 -0.59 -0.14 15.4 87 3 3 3 7 4 0 0  KPI 166 F LYS 301 F ACT 303 F
10 1.49 1.52 40.3 -0.61 -0.16 16.2 86 3 4 3 7 4 0 0  KPI 166 E LYS 301 E ACT 303 F
11 1.40 1.44 66.2 0.01 -0.03 7.2 86 3 3 8 14 8 0 0  KPI 166 E LYS 301 E KPI 166 F LYS 301 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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