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PDBsum entry 4mfa

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 4mfa calculated with MOLE 2.0 PDB id
4mfa
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.13 1.13 18.6 -0.63 -0.34 13.7 79 2 0 0 2 1 0 0  DG 1 D DT 2 D DC 3 D DG 4 D DC 5 T
2 1.11 1.11 22.1 -1.74 -0.42 21.2 87 3 1 2 2 1 0 0  DG 1 D DT 2 D DC 5 T 6OG 6 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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