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PDBsum entry 4md4

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Immune system PDB id
4md4
Contents
Protein chains
182 a.a.
189 a.a.
13 a.a.
Ligands
NAG-NAG
NAG ×2
EDO ×3
Waters ×470

References listed in PDB file
Key reference
Title A molecular basis for the association of the hla-Drb1 locus, Citrullination, And rheumatoid arthritis.
Authors S.W.Scally, J.Petersen, S.C.Law, N.L.Dudek, H.J.Nel, K.L.Loh, L.C.Wijeyewickrema, S.B.Eckle, J.Van heemst, R.N.Pike, J.Mccluskey, R.E.Toes, N.L.La gruta, A.W.Purcell, H.H.Reid, R.Thomas, J.Rossjohn.
Ref. J Exp Med, 2013, 210, 2569-2582. [DOI no: 10.1084/jem.20131241]
PubMed id 24190431
Abstract
Rheumatoid arthritis (RA) is strongly associated with the human leukocyte antigen (HLA)-DRB1 locus that possesses the shared susceptibility epitope (SE) and the citrullination of self-antigens. We show how citrullinated aggrecan and vimentin epitopes bind to HLA-DRB1*04:01/04. Citrulline was accommodated within the electropositive P4 pocket of HLA-DRB1*04:01/04, whereas the electronegative P4 pocket of the RA-resistant HLA-DRB1*04:02 allomorph interacted with arginine or citrulline-containing epitopes. Peptide elution studies revealed P4 arginine-containing peptides from HLA-DRB1*04:02, but not from HLA-DRB1*04:01/04. Citrullination altered protease susceptibility of vimentin, thereby generating self-epitopes that are presented to T cells in HLA-DRB1*04:01(+) individuals. Using HLA-II tetramers, we observed citrullinated vimentin- and aggrecan-specific CD4(+) T cells in the peripheral blood of HLA-DRB1*04:01(+) RA-affected and healthy individuals. In RA patients, autoreactive T cell numbers correlated with disease activity and were deficient in regulatory T cells relative to healthy individuals. These findings reshape our understanding of the association between citrullination, the HLA-DRB1 locus, and T cell autoreactivity in RA.
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