PDBsum entry 4m9c

Tunnel analysis for: 4m9c calculated with

MOLE 2.0

PDB id

4m9c

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.07

3.50

74.0

-1.43

-0.31

12.3

76

5

1

3

4

4

3

0

2

1.37

2.07

29.1

-2.01

-0.42

16.6

78

3

0

3

3

4

0

0

3

1.28

1.38

29.1

-0.98

-0.27

11.7

90

2

1

6

2

1

2

0

4

1.27

1.38

29.3

-0.92

-0.12

11.8

88

3

1

5

5

2

1

0

5

1.26

1.94

31.6

-0.96

-0.16

14.0

85

3

2

4

6

2

1

0

6

1.24

1.81

19.9

-0.87

-0.10

11.1

88

2

1

4

3

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.