PDBsum entry 4m01

Tunnel analysis for: 4m01 calculated with

MOLE 2.0

PDB id

4m01

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

11 tunnels, coloured by tunnel radius

11 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

1.41

32.1

1.64

0.44

2.7

71

1

0

1

5

6

0

0

MSE 270 C MSE 471 C

2

1.35

1.53

23.5

-0.43

-0.48

6.4

92

1

0

1

5

1

1

0

3

1.11

1.41

28.6

-1.00

-0.40

12.9

92

1

3

2

6

1

0

0

GOL 602 B

4

1.32

1.45

28.0

2.31

0.78

2.7

67

1

0

0

6

6

0

0

MSE 270 B MSE 471 B

5

1.17

1.16

45.5

1.03

0.23

1.8

76

0

0

3

5

7

1

0

MSE 270 B MSE 471 B

6

1.15

1.15

27.5

1.95

0.54

1.4

66

0

0

0

4

6

0

0

MSE 270 A MSE 471 A

7

1.25

1.46

22.1

-0.85

-0.42

14.1

91

1

3

1

6

1

0

0

GOL 602 C

8

1.29

1.29

23.2

-0.41

-0.46

8.1

95

1

0

1

5

0

1

0

9

1.08

1.37

26.7

-1.04

-0.45

12.8

92

1

3

2

6

1

0

0

GOL 602 A

10

1.18

1.44

30.4

-1.08

-0.41

13.6

91

1

3

1

6

1

0

0

GOL 602 D

11

1.10

1.10

15.1

0.36

-0.23

4.9

90

1

1

0

3

1

0

0

MSE 560 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.