PDBsum entry 4lsp

Tunnel analysis for: 4lsp calculated with

MOLE 2.0

PDB id

4lsp

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

11 tunnels, coloured by tunnel radius

11 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.22

1.37

30.6

-0.15

0.16

9.5

74

3

1

2

5

3

2

1

NAG 503 G

2

1.13

1.46

34.6

-1.56

-0.51

18.6

81

5

3

2

1

2

1

0

NAG 504 G EDO 515 G EDO 516 G EDO 302 H

3

1.17

1.43

34.8

-1.79

-0.52

19.8

80

6

3

2

1

2

1

0

EDO 515 G EDO 516 G EDO 302 H

4

1.16

1.46

38.3

-0.83

-0.48

6.4

83

2

1

2

1

2

2

0

EDO 515 G EDO 516 G EDO 302 H

5

1.17

1.49

39.3

-0.95

-0.45

7.2

84

3

1

3

2

2

2

0

EDO 515 G EDO 516 G EDO 302 H

6

1.17

1.18

40.1

-1.14

-0.57

12.2

92

2

1

5

4

2

0

0

EDO 515 G EDO 516 G

7

1.28

1.39

50.0

-0.79

0.25

14.5

80

4

2

3

7

4

1

0

EDO 517 G PEG 520 G PEG 521 G NA 523 G

8

1.17

1.48

54.4

-0.38

-0.11

8.7

83

4

2

4

6

4

1

1

NAG 503 G EDO 515 G EDO 516 G EDO 517 G PEG 520 G

9

1.29

1.40

54.6

-0.39

0.23

8.4

80

3

2

4

7

4

3

0

EDO 517 G PEG 520 G

10

1.32

1.62

63.6

-0.17

0.09

9.8

81

3

2

4

7

5

1

0

EDO 516 G EDO 517 G PEG 520 G

11

1.14

1.46

15.3

-1.08

-0.21

16.4

79

1

1

0

3

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.