PDBsum entry 4lms

Pore analysis for: 4lms calculated with

MOLE 2.0

PDB id

4lms

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

7 pores, coloured by radius

7 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.68

3.10

32.0

-0.97

-0.35

14.4

72

3

2

2

2

2

0

1

M1V 101 A

2

1.22

1.25

39.5

0.41

0.18

9.8

81

3

2

1

7

2

2

1

DBV 201 B M1V 101 C

3

1.53

1.53

39.6

-0.68

-0.41

12.9

89

5

2

4

6

0

1

0

4

1.64

1.64

41.3

-0.60

-0.47

12.4

90

3

3

5

6

0

1

2

DBV 201 B

5

1.40

1.37

70.0

-1.06

-0.24

15.7

79

5

1

3

8

0

2

2

MEN 72 D CYC 203 D

6

1.56

1.60

91.3

-0.87

-0.31

17.2

82

8

4

3

11

0

1

2

MEN 72 D CYC 203 D

7

1.90

1.90

143.1

-0.77

-0.42

11.1

87

7

2

8

9

1

2

2

M1V 101 A DBV 201 B CYC 202 B DBV 201 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.