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PDBsum entry 4lfc
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Tunnel analysis for: 4lfc calculated with  MOLE 2.0
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PDB id
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4lfc
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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16 tunnels,
coloured by tunnel radius |
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15 tunnels,
coloured by
tunnel radius
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15 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.48 |
1.48 |
62.1 |
-0.78 |
-0.80 |
8.4 |
84 |
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1 |
1 |
0 |
0 |
0 |
0 |
0 |
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U 45 A C 58 A A 59 A C 110 A G 111 A G 112 A C
308 A G 309 A C 330 A G 331 A G 354 A C 355 A A
356 A C 369 A C 370 A G 371 A C 372 A G 376 A G
377 A C 386 A U 387 A G 388 A A 389 A C 390 A G
391 A G 392 A A 393 A
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2 |
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1.48 |
1.48 |
63.7 |
-0.95 |
-0.77 |
10.6 |
80 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
C 40 A G 41 A G 42 A C 43 A G 44 A U 45 A A 59 A
C 110 A G 111 A G 112 A C 308 A G 309 A C 330 A G
331 A G 354 A G 376 A G 377 A U 387 A A 389 A C
390 A G 391 A G 392 A A 393 A G 394 A C 395 A G
396 A MG 1667 A MG 1726 A
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3 |
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1.48 |
1.48 |
64.5 |
-0.61 |
-0.69 |
5.6 |
85 |
2 |
0 |
1 |
1 |
0 |
0 |
0 |
A 59 A G 107 A G 108 A C 110 A G 111 A G 112 A A
134 A C 135 A C 136 A C 137 A G 138 A G 139 A C
218 A C 219 A G 220 A C 330 A G 331 A G 354 A G
376 A G 377 A G 378 A C 379 A G 380 A A 382 A U
387 A A 389 A A 460 A G 462 A MG 1735 A MG 1736 A
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4 |
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1.48 |
1.48 |
65.1 |
-0.86 |
-0.77 |
10.2 |
75 |
3 |
1 |
0 |
0 |
1 |
0 |
0 |
G 44 A A 59 A C 110 A G 111 A G 112 A C 308 A G
309 A C 330 A G 331 A G 354 A G 376 A G 377 A U
387 A A 389 A C 390 A G 391 A A 608 A A 609 A G
610 A C 624 A G 625 A U 626 A G 627 A G 628 A MG
1639 A
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5 |
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1.49 |
1.49 |
67.1 |
-0.69 |
-0.79 |
7.3 |
84 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
U 45 A G 46 A C 47 A A 59 A C 110 A G 111 A G 112
A G 113 A C 308 A G 309 A C 330 A G 331 A G 354 A
C 355 A A 356 A G 357 A U 358 A U 359 A G 362 A U
365 A C 366 A G 376 A G 377 A U 387 A A 389 A C
390 A G 391 A
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6 |
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1.48 |
1.48 |
67.0 |
-0.65 |
-0.63 |
8.8 |
88 |
2 |
1 |
0 |
1 |
0 |
0 |
0 |
A 59 A G 107 A G 108 A C 110 A G 111 A G 112 A A
134 A C 135 A C 330 A G 331 A G 354 A C 372 A A
373 A A 374 A G 376 A G 377 A G 378 A C 379 A G
380 A G 384 A C 385 A U 387 A A 389 A C 454 A U
480 A MG 1613 A MG 1735 A MG 1736 A
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7 |
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1.47 |
1.47 |
78.4 |
-0.60 |
-0.77 |
6.0 |
87 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
A 59 A C 106 A G 107 A G 108 A C 110 A G 111 A G
112 A G 129 A i:A C 132 A U 133 A A 134 A C 135 A
G 190 A i:G G 190 A i:H U 222 A U 223 A C 224 A C
225 A G 226 A G 227 A A 325 A C 330 A G 331 A G
354 A G 376 A G 377 A G 378 A C 379 A U 387 A A
389 A
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8 |
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1.48 |
1.48 |
79.7 |
-0.59 |
-0.79 |
5.5 |
90 |
2 |
0 |
1 |
0 |
0 |
0 |
0 |
A 59 A C 106 A G 107 A G 108 A C 110 A G 111 A G
112 A A 134 A C 135 A G 146 A G 147 A A 172 A U
173 A C 175 A C 176 A A 196 A A 197 A G 198 A U
222 A A 325 A C 330 A G 331 A G 354 A G 376 A G
377 A G 378 A C 379 A U 387 A A 389 A MG 1668 A
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9 |
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1.48 |
1.48 |
80.9 |
-0.87 |
-0.78 |
9.2 |
86 |
2 |
1 |
1 |
0 |
0 |
0 |
0 |
U 5 A G 6 A G 29 A U 30 A G 44 A U 45 A A 59 A C
110 A G 111 A G 112 A C 295 A U 296 A G 297 A G
299 A C 307 A C 308 A G 309 A C 330 A G 331 A G
354 A G 376 A G 377 A U 387 A A 389 A C 390 A G
391 A C 400 A C 401 A A 611 A C 612 A C 623 A C
624 A G 630 A MG 1611 A K 1704 A MG 1719 A
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10 |
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1.45 |
1.45 |
85.5 |
-0.88 |
-0.74 |
7.9 |
86 |
4 |
0 |
1 |
0 |
0 |
0 |
0 |
A 59 A C 106 A G 107 A G 108 A C 110 A G 111 A G
112 A C 131 A C 132 A U 133 A A 134 A C 135 A A
185 A C 186 A C 187 A C 188 A G 190 A i:G G 190 A
i:F U 222 A U 223 A C 224 A C 225 A A 325 A C 330
A G 331 A G 354 A G 376 A G 377 A G 378 A C 379 A
U 387 A A 389 A
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11 |
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1.46 |
1.46 |
88.6 |
-0.60 |
-0.76 |
7.2 |
73 |
2 |
1 |
0 |
1 |
0 |
0 |
0 |
G 29 A U 30 A G 31 A G 44 A U 45 A C 48 A U 49 A
A 50 A A 59 A C 110 A G 111 A G 112 A A 288 A U
294 A C 295 A U 304 A G 305 A G 306 A C 307 A C
308 A G 309 A C 330 A G 331 A G 354 A G 376 A G
377 A U 387 A A 389 A C 390 A G 391 A C 554 A C
555 A C 623 A C 624 A
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12 |
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1.49 |
1.49 |
95.8 |
-0.69 |
-0.78 |
7.2 |
80 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
A 59 A C 110 A G 111 A G 112 A G 113 A U 114 A C
308 A G 309 A C 311 A C 312 A A 313 A C 314 A A
315 A G 316 A C 328 A A 329 A C 330 A G 331 A G
333 A C 334 A C 335 A C 336 A C 337 A G 347 A G
348 A A 349 A G 350 A G 351 A G 354 A G 376 A G
377 A U 387 A A 389 A C 390 A MG 1675 A
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13 |
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1.48 |
1.48 |
98.7 |
-0.63 |
-0.79 |
6.4 |
80 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
A 59 A C 110 A G 111 A G 112 A G 113 A U 114 A G
232 A C 233 A G 258 A G 259 A G 260 A A 263 A G
265 A C 267 A C 268 A C 269 A A 270 A C 308 A G
309 A C 311 A C 312 A A 313 A A 321 A C 328 A C
330 A G 331 A G 354 A G 376 A G 377 A U 387 A A
389 A C 390 A U 1436 A C 1437 A G 1438 A MG 1675 A
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14 |
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1.48 |
1.48 |
101.3 |
-0.64 |
-0.79 |
6.6 |
80 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
A 59 A C 110 A G 111 A G 112 A G 113 A U 114 A A
119 A A 120 A G 122 A G 232 A C 233 A G 251 A U
252 A G 265 A C 267 A C 268 A C 308 A G 309 A C
311 A C 312 A A 313 A C 314 A G 319 A C 320 A C
328 A C 330 A G 331 A G 354 A G 376 A G 377 A U
387 A A 389 A C 390 A C 1426 A U 1427 A A 1428 A
C 1429 A G 1467 A A 1468 A MG 1675 A
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15 |
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1.18 |
1.48 |
20.3 |
1.51 |
0.15 |
1.3 |
70 |
0 |
0 |
0 |
5 |
0 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program