PDBsum entry 4l2k

Tunnel analysis for: 4l2k calculated with

MOLE 2.0

PDB id

4l2k

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.36

1.50

21.1

-0.28

0.12

8.4

78

3

2

2

6

7

3

0

1V8 1201 A

2

1.38

2.08

26.0

-0.32

0.11

9.4

69

1

3

0

4

6

3

0

3

1.38

2.12

33.1

-0.15

0.13

9.3

81

1

4

1

6

5

3

0

4

1.18

1.38

45.7

-0.01

-0.05

8.9

83

4

2

3

8

5

2

0

GOL 1201 C

5

1.34

1.41

22.6

-0.29

0.38

11.2

74

1

3

0

4

6

1

0

1V8 1204 B

6

1.34

1.40

25.6

-0.28

0.16

9.6

78

4

2

2

5

7

3

0

1V8 1204 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.