PDBsum entry 4k5e

Pore analysis for: 4k5e calculated with

MOLE 2.0

PDB id

4k5e

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.18

42.0

-2.29

-0.43

25.5

80

6

5

4

2

1

1

0

1Q7 803 A

2

1.97

1.97

49.2

-0.87

0.04

11.8

76

3

2

8

5

5

1

1

HEM 801 A 1Q7 803 A ACT 804 A

3

1.18

1.18

56.6

-1.38

-0.19

19.4

76

5

4

6

5

5

2

1

HEM 801 A 1Q7 803 A ACT 804 A

4

1.48

1.55

56.7

-1.81

-0.52

19.0

82

3

4

5

3

2

0

0

5

1.67

3.66

77.4

-0.84

0.02

12.6

78

3

4

8

8

5

0

1

HEM 801 B 1Q7 803 B ACT 804 B

6

1.27

1.66

105.3

-1.00

-0.17

20.2

80

6

6

4

10

3

2

1

HEM 801 B 1Q7 803 B ACT 804 B

7

1.31

1.87

105.4

-1.48

-0.40

22.9

80

8

7

4

5

0

2

0

8

1.48

4.41

114.3

-0.71

-0.07

17.0

80

6

7

7

11

3

2

1

HEM 801 B 1Q7 803 B ACT 804 B

9

1.22

1.38

115.6

-1.58

-0.02

17.2

73

10

7

11

7

10

2

0

HEM 801 A H4B 802 A 1Q7 803 A HEM 801 B H4B 802 B
1Q7 803 B

10

1.28

1.85

123.9

-1.62

-0.41

23.8

81

9

9

4

7

1

1

0

11

1.25

1.69

132.0

-1.28

-0.33

17.3

77

10

9

4

6

2

4

2

12

1.48

4.40

136.0

-1.24

-0.32

15.9

76

9

9

6

7

2

4

2

13

1.33

1.93

135.7

-1.69

-0.37

22.8

76

8

8

5

7

3

1

0

14

1.37

4.51

137.9

-1.62

-0.38

21.4

78

10

10

6

8

1

2

0

15

1.48

4.43

147.9

-1.53

-0.31

20.8

75

8

8

7

8

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.