PDBsum entry 4jjs Go to PDB code:  Tunnel analysis for: 4jjs calculated with MOLE 2.0 PDB id 4jjs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.88 46.0 -0.37 -0.14 15.0 84 5 6 4 8 2 0 1   2 1.27 1.61 46.2 -0.17 0.02 12.6 83 5 1 6 10 2 1 2   3 1.34 1.34 17.6 0.20 -0.39 8.0 83 1 2 0 6 0 0 0   4 1.45 1.51 15.7 -1.58 -0.16 22.9 71 3 1 0 1 2 1 0   5 1.67 1.96 23.8 -1.79 -0.15 24.4 67 2 0 0 3 1 0 0   6 1.21 1.21 15.5 1.01 0.06 8.0 76 0 2 0 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.