spacer
spacer

PDBsum entry 4jgw

Go to PDB code: 
Top Page protein Protein-protein interface(s) tunnels links
Tunnel analysis for: 4jgw calculated with MOLE 2.0 PDB id
4jgw
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.19 1.47 19.6 1.53 0.48 4.0 65 1 0 1 7 2 0 0  
2 1.19 1.47 21.6 0.86 0.28 5.0 68 1 0 3 7 2 0 0  
3 1.22 2.84 23.9 1.25 0.58 1.7 71 1 0 2 4 4 1 0  
4 1.21 2.12 24.1 1.21 0.57 1.7 71 1 0 2 4 4 1 0  
5 1.22 1.47 18.8 1.62 0.62 3.2 68 1 0 3 7 2 0 0  
6 1.21 1.44 27.0 1.02 0.27 3.6 71 1 0 3 7 2 2 0  
7 1.55 1.71 17.7 -1.14 -0.14 22.0 80 2 0 1 2 2 0 0  
8 1.23 1.33 15.8 0.67 0.06 3.9 84 0 1 2 5 2 0 0  
9 1.08 2.49 35.0 1.11 0.10 5.8 76 1 2 0 8 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer