spacer
spacer

PDBsum entry 4jfb

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 4jfb calculated with MOLE 2.0 PDB id
4jfb
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.40 1.40 56.8 -1.68 -0.38 16.3 79 8 5 5 2 5 0 0  
2 1.64 3.00 78.8 -1.44 -0.38 17.9 83 7 7 4 5 5 0 0  
3 1.47 1.42 82.1 -1.42 -0.67 13.0 94 4 6 8 4 0 0 0  
4 1.46 1.44 96.6 -1.41 -0.51 14.6 88 8 7 8 4 3 0 0  
5 3.48 3.62 40.6 -1.46 -0.36 17.3 79 6 6 2 2 4 0 0  
6 1.28 1.33 27.1 -1.12 -0.45 10.9 86 4 1 3 1 2 0 0  
7 2.75 4.76 25.5 -2.01 -0.17 21.3 76 8 2 2 2 4 0 0  
8 2.51 4.14 29.1 -1.85 -0.17 21.3 76 7 2 2 2 5 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer