PDBsum entry 4jdi Go to PDB code:  Tunnel analysis for: 4jdi calculated with MOLE 2.0 PDB id 4jdi Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.36 29.6 -0.40 -0.38 13.2 87 2 5 1 5 1 0 0  ANP 1000 A MG 1001 A 2 1.29 1.38 34.5 0.28 -0.09 11.1 86 2 3 1 7 1 0 0  ANP 1000 A 3 1.27 1.36 42.5 -0.63 -0.32 13.3 80 1 2 3 6 2 0 0  ANP 1000 A MG 1002 A 4 1.46 1.46 16.3 0.23 -0.32 7.4 85 1 1 0 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.