PDBsum entry 4jdd Go to PDB code:  Tunnel analysis for: 4jdd calculated with MOLE 2.0 PDB id 4jdd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.32 16.1 -0.64 -0.09 12.8 81 2 2 2 3 3 0 0  FSC 301 A 2 1.20 1.32 17.1 -0.62 -0.02 13.7 80 2 2 2 3 3 1 0  FSC 301 A 3 1.19 1.31 34.6 -1.75 -0.09 26.0 75 4 3 2 4 5 1 0  TPO 594 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.