PDBsum entry 4jd9

Tunnel analysis for: 4jd9 calculated with

MOLE 2.0

PDB id

4jd9

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.11

3.11

22.3

-1.33

0.02

16.5

76

3

1

4

1

4

1

0

2

2.46

4.14

17.1

-2.26

-0.33

21.1

83

4

1

3

1

1

1

0

3

2.43

3.96

18.4

-2.27

-0.32

21.9

83

4

1

3

1

1

1

0

4

1.34

2.12

20.7

-2.28

-0.52

21.9

85

4

2

4

2

1

0

0

5

2.39

4.22

21.7

-2.35

-0.38

24.8

83

4

2

4

1

1

1

0

6

1.28

2.13

21.9

-2.25

-0.41

22.7

86

4

2

5

2

1

0

0

7

2.29

3.77

22.9

-2.40

-0.41

25.4

83

4

2

4

1

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.