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PDBsum entry 4jcb

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Top Page protein ligands metals Protein-protein interface(s) links
Photosynthesis PDB id
4jcb
Contents
Protein chains
(+ 8 more) 42 a.a.
57 a.a.
(+ 8 more) 48 a.a.
250 a.a.
281 a.a.
304 a.a.
Ligands
BCL ×32
BPH ×2
U10
PO4
Metals
FE2
procheck   Generate full PROCHECK analyses

PROCHECK summary for 4jcb

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         1116       60.6%** 
Additional allowed regions [a,b,l,p]        624       33.9%          
Generously allowed regions [~a,~b,~l,~p]     68        3.7%          
Disallowed regions         [XX]              35        1.9%*  
                                           ----      ------
Non-glycine and non-proline residues       1843      100.0%

End-residues (excl. Gly and Pro)             63

Glycine residues                            154
Proline residues                             92
                                           ----
Total number of residues                   2152


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -1.44**
     Chi1-chi2 distribution          -1.31**
     Chi1 only                       -0.30      
     Chi3 & chi4                      0.61      
     Omega                           -1.06**
                                                  -1.07**
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.68      
     Main-chain bond angles           0.70      
                                                   0.69      
                                                  =====

     OVERALL AVERAGE                              -0.36      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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