PDBsum entry 4jb9

Tunnel analysis for: 4jb9 calculated with

MOLE 2.0

PDB id

4jb9

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.37

2.37

25.7

-1.32

0.12

13.2

72

2

2

3

3

4

1

0

2

1.12

1.42

28.9

-0.15

0.20

10.2

73

2

1

2

5

3

2

2

NAG 503 G

3

1.08

3.17

29.1

-0.13

0.29

10.3

70

2

2

2

4

4

2

2

NAG 503 G

4

1.33

1.42

29.7

-0.51

0.04

10.8

77

2

2

3

4

4

1

1

NAG 503 G

5

1.22

1.74

43.0

-0.28

0.47

8.8

73

3

1

3

7

6

2

0

6

1.40

1.52

18.8

-1.27

-0.37

15.0

78

2

1

1

3

2

1

0

7

1.16

1.34

19.8

-1.17

-0.24

14.1

72

2

1

1

2

2

1

1

8

1.39

1.49

21.0

-0.65

-0.17

9.6

74

2

1

2

2

2

2

0

9

1.29

1.48

15.4

-0.41

-0.19

1.9

75

0

0

1

1

2

3

0

NAG 508 G

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.