PDBsum entry 4j9m Go to PDB code:  Pore analysis for: 4j9m calculated with MOLE 2.0 PDB id 4j9m Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.32 36.7 -0.55 -0.23 16.5 77 4 0 1 1 0 1 0  DG 4 P DT 5 P DC 6 P DT 8 P DC 3 T DT 4 T 2 1.43 1.59 49.3 -1.03 -0.22 20.8 79 6 5 2 3 1 1 0  MG 501 A XG4 504 A GOL 506 A DA 9 P DT 5 T DA 6 T DT 7 T 3 1.32 1.32 49.3 -1.55 -0.42 22.9 85 7 0 2 1 0 0 0  DG 4 P DT 5 P DC 6 P DT 8 P DA 9 P DT 4 T 4 1.41 1.59 52.8 -0.57 -0.01 15.7 78 4 3 3 4 3 1 0  XG4 504 A GOL 506 A DA 9 P DC 3 T DT 4 T DT 5 T D A 6 T DT 7 T 5 2.12 2.15 60.4 -1.06 -0.66 11.7 86 5 3 3 1 1 0 0  MG 501 A XG4 504 A DC 6 P DA 7 P DT 8 P DA 9 P DA 6 T DT 7 T DG 8 T DA 9 T DC 10 T DG 11 T DT 12 T 6 1.39 1.59 69.5 -1.41 -0.61 15.4 88 5 4 5 2 0 1 0  GOL 506 A DC 6 P DA 7 P DT 8 P DA 6 T DT 7 T DG 8 T DA 9 T DC 10 T DG 11 T DT 12 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.