PDBsum entry 4hdh

Pore analysis for: 4hdh calculated with

MOLE 2.0

PDB id

4hdh

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

3.07

3.75

36.9

0.40

-0.09

3.4

76

1

0

1

4

3

2

0

2

2.54

2.66

45.9

-1.62

-0.21

20.1

71

6

3

0

2

2

4

0

3

2.17

3.77

51.3

-0.98

-0.32

12.5

79

1

4

1

4

3

2

0

4

1.95

3.63

53.6

-2.40

-0.50

23.5

80

4

7

5

3

2

1

0

5

1.67

1.77

55.9

-2.03

-0.57

27.0

82

9

7

1

6

2

0

0

6

1.44

2.53

61.2

-1.78

-0.43

19.9

81

9

6

7

2

2

1

0

ATP 1001 A

7

1.47

2.57

62.4

-1.77

-0.44

19.7

82

8

6

6

3

2

1

0

ATP 1001 B

8

2.97

3.61

65.6

-1.30

-0.38

16.9

85

6

3

4

4

2

1

0

9

2.30

2.32

68.3

-1.77

-0.49

22.6

80

10

6

3

5

2

2

0

10

1.47

2.97

69.0

-1.50

-0.28

18.0

83

8

5

6

4

4

2

0

ATP 1001 A

11

1.85

1.85

81.0

-1.80

-0.40

24.8

85

13

8

7

4

1

0

0

ATP 1001 A

12

2.46

2.45

92.0

-1.17

-0.25

16.2

79

5

4

3

5

4

2

0

13

2.16

3.77

101.8

-1.59

-0.29

20.9

80

6

8

3

6

2

3

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.