spacer
spacer

PDBsum entry 4gtc

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4gtc calculated with MOLE 2.0 PDB id
4gtc
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.40 2.69 26.9 -2.19 -0.43 26.2 82 6 1 2 1 1 0 0  FAD 301 B
2 1.56 3.57 30.7 -1.60 -0.39 21.0 81 10 2 3 3 1 0 0  FAD 301 A
3 1.69 1.69 31.5 -2.23 -0.57 25.0 81 7 1 3 2 1 0 0  
4 1.56 1.82 54.0 -2.03 -0.41 27.2 77 10 2 4 4 2 1 0  
5 1.52 1.73 55.6 -2.47 -0.49 27.9 80 12 2 4 0 4 0 0  FAD 301 B FAD 301 C
6 1.51 1.83 56.4 -2.10 -0.45 27.3 79 10 3 4 2 3 0 0  FAD 301 C
7 1.55 1.83 59.5 -1.55 -0.39 23.4 78 9 3 5 6 2 0 0  
8 2.05 3.36 63.3 -0.79 0.22 24.3 87 13 2 3 6 1 0 0  FAD 301 A FAD 301 C FAD 300 D
9 1.70 1.71 69.5 -1.88 -0.25 26.6 85 16 1 4 6 1 0 0  FAD 301 B FAD 300 D
10 2.19 2.77 70.2 -1.53 -0.04 26.1 87 15 2 6 6 1 0 0  FAD 301 A FAD 301 B FAD 301 C
11 1.59 3.58 70.6 -1.87 -0.31 25.0 85 17 2 6 7 1 0 0  FAD 301 A FAD 301 C
12 2.03 3.17 71.7 -0.74 0.21 23.0 87 15 0 3 6 2 0 0  FAD 301 C FAD 300 D
13 1.66 3.98 78.0 -1.47 -0.16 25.3 87 15 4 6 8 0 0 0  FAD 301 A FAD 301 B FAD 301 C
14 1.78 1.94 79.2 -0.88 -0.01 21.3 86 14 4 6 9 0 0 0  FAD 301 A FAD 301 C FAD 300 D
15 1.76 1.90 79.8 -1.93 -0.32 24.0 85 18 1 8 7 1 0 0  FAD 301 B FAD 300 D
16 1.72 1.77 85.5 -1.73 -0.38 23.1 84 18 3 7 9 0 0 0  FAD 301 B FAD 300 D
17 1.77 1.94 87.6 -0.85 -0.02 20.2 86 16 2 6 9 1 0 0  FAD 301 C FAD 300 D
18 2.02 2.22 89.8 -1.39 -0.14 23.4 86 18 1 8 9 1 0 0  FAD 301 A FAD 301 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer