PDBsum entry 4gdk Go to PDB code:  Pore analysis for: 4gdk calculated with MOLE 2.0 PDB id 4gdk Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.81 1.88 30.7 -2.22 -0.62 20.7 82 4 1 4 1 0 1 0   2 1.29 2.50 45.9 -2.44 -0.78 29.5 83 4 5 0 0 0 1 0   3 1.47 1.95 60.3 -1.81 -0.68 17.5 88 5 5 5 2 0 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.