spacer
spacer

PDBsum entry 4fpb

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4fpb calculated with MOLE 2.0 PDB id
4fpb
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
11 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.14 4.17 34.7 -0.62 -0.48 10.6 88 3 2 5 4 0 1 0  
2 1.46 1.58 38.1 -1.76 -0.31 21.3 81 9 4 2 3 0 1 0  
3 3.35 4.28 38.2 -1.07 -0.44 15.2 84 5 3 4 3 0 1 0  
4 3.35 4.31 40.4 -1.09 -0.29 16.9 87 5 4 5 3 0 0 0  
5 2.35 2.63 45.2 -1.28 -0.55 15.6 83 5 2 5 3 0 1 0  
6 1.47 1.59 49.6 -1.69 -0.35 24.5 80 9 2 3 4 0 1 0  
7 2.43 2.41 57.0 -1.90 -0.45 22.6 82 7 5 5 5 0 1 0  
8 2.20 3.42 62.8 -1.12 -0.28 18.9 87 7 6 5 4 0 0 0  
9 2.35 2.63 64.0 -2.17 -0.52 24.3 81 7 4 6 5 0 1 0  
10 3.36 4.18 72.0 -1.57 -0.35 22.2 85 8 5 7 6 0 0 0  
11 1.18 1.18 82.0 -1.65 -0.56 20.3 85 9 8 7 5 0 2 0  BGC 1003 B 0WK 1004 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer