spacer
spacer

PDBsum entry 4fab

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 4fab calculated with MOLE 2.0 PDB id
4fab
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
10 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 3.40 24.4 -0.71 -0.58 6.9 86 1 0 4 3 1 0 0  
2 1.17 1.19 31.8 0.37 -0.33 2.9 91 1 0 6 6 1 0 0  
3 1.17 1.27 18.5 0.58 0.57 5.1 74 2 0 1 4 2 0 0  
4 1.06 1.82 21.3 0.52 0.43 5.2 80 1 0 2 5 2 0 0  
5 1.09 2.37 20.7 2.57 0.65 2.4 80 0 1 1 9 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer