PDBsum entry 4f6t

Tunnel analysis for: 4f6t calculated with

MOLE 2.0

PDB id

4f6t

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

12 tunnels, coloured by tunnel radius

13 tunnels, coloured by tunnel radius

13 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.46

1.55

17.6

-1.69

-0.42

17.2

76

2

1

0

1

0

3

0

2

1.24

1.51

26.0

-1.18

-0.24

16.1

75

3

2

0

3

2

3

0

3

1.15

1.34

18.0

-0.73

0.07

17.6

67

2

1

0

3

2

0

0

8M0 303 A PO4 305 A

4

1.15

1.64

15.8

-0.39

-0.22

9.6

84

2

2

1

3

0

2

0

6M0 305 B

5

1.25

1.34

16.5

-0.20

-0.16

8.2

84

1

2

1

3

0

2

0

6M0 305 B

6

1.14

1.63

21.2

-0.62

-0.32

10.9

80

3

1

1

3

0

4

0

8M0 303 A 8M0 302 B MG 304 B 6M0 305 B

7

1.14

1.53

21.8

-0.60

-0.29

10.9

80

2

1

1

3

0

4

0

8M0 303 A 8M0 302 B MG 304 B 6M0 305 B

8

1.18

1.18

31.6

-1.21

-0.48

17.1

84

3

1

1

2

0

0

1

PO4 303 B

9

1.34

1.61

16.1

-1.11

-0.43

15.5

81

2

1

2

3

0

1

0

10

1.36

1.63

18.4

-1.86

-0.52

19.9

79

2

2

2

2

0

1

0

11

1.24

2.22

19.1

3.79

1.30

0.3

79

0

0

0

9

0

0

0

12

1.23

1.49

15.5

-0.13

-0.20

13.3

71

1

2

0

4

0

2

0

13

1.24

1.61

19.0

0.08

-0.26

7.5

70

1

1

0

5

0

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.