 |
PDBsum entry 4f0x
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4f0x calculated with MOLE 2.0
|
PDB id
|
|
|
|
4f0x
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
39 pores,
coloured by radius |
 |
38 pores,
coloured by radius
|
38 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.11 |
3.61 |
43.9 |
-0.59 |
0.49 |
9.9 |
65 |
 |
2 |
1 |
3 |
5 |
4 |
1 |
2 |
 |
|
 |
 |
2 |
 |
1.49 |
1.50 |
58.9 |
-1.12 |
-0.39 |
17.3 |
82 |
8 |
3 |
7 |
4 |
3 |
0 |
0 |
|
 |
3 |
 |
2.23 |
2.43 |
70.6 |
-2.38 |
-0.35 |
33.0 |
83 |
15 |
4 |
5 |
5 |
1 |
0 |
0 |
|
 |
4 |
 |
1.86 |
2.11 |
86.9 |
-0.92 |
0.27 |
12.0 |
71 |
5 |
3 |
6 |
5 |
4 |
3 |
2 |
|
 |
5 |
 |
1.55 |
2.22 |
92.0 |
-1.57 |
-0.33 |
24.6 |
84 |
15 |
6 |
7 |
7 |
3 |
0 |
0 |
|
 |
6 |
 |
1.25 |
1.79 |
126.4 |
-1.85 |
-0.39 |
25.6 |
82 |
15 |
7 |
7 |
6 |
4 |
2 |
0 |
|
 |
7 |
 |
1.32 |
2.57 |
144.8 |
-1.40 |
-0.58 |
16.2 |
85 |
14 |
6 |
10 |
7 |
1 |
2 |
0 |
0OR 501 D
|
 |
8 |
 |
1.38 |
1.38 |
259.7 |
-1.61 |
-0.46 |
19.9 |
81 |
19 |
14 |
14 |
12 |
6 |
2 |
0 |
|
 |
9 |
 |
1.58 |
1.80 |
32.9 |
-0.54 |
-0.33 |
15.8 |
87 |
2 |
2 |
2 |
4 |
2 |
0 |
0 |
|
 |
10 |
 |
2.02 |
2.30 |
36.1 |
-1.45 |
-0.31 |
18.7 |
75 |
6 |
1 |
3 |
5 |
1 |
1 |
0 |
|
 |
11 |
 |
1.76 |
1.83 |
41.4 |
-1.24 |
-0.42 |
14.3 |
78 |
5 |
0 |
5 |
4 |
2 |
1 |
0 |
|
 |
12 |
 |
1.50 |
1.51 |
41.3 |
-1.87 |
-0.30 |
23.3 |
83 |
6 |
2 |
2 |
1 |
1 |
1 |
0 |
|
 |
13 |
 |
1.52 |
1.53 |
43.1 |
-0.86 |
-0.29 |
18.0 |
80 |
5 |
2 |
1 |
4 |
1 |
1 |
0 |
|
 |
14 |
 |
1.52 |
1.53 |
44.3 |
-0.88 |
-0.41 |
14.2 |
83 |
5 |
2 |
3 |
2 |
2 |
1 |
0 |
|
 |
15 |
 |
1.51 |
1.52 |
44.5 |
-1.49 |
-0.36 |
17.1 |
79 |
5 |
1 |
4 |
4 |
2 |
2 |
0 |
|
 |
16 |
 |
1.20 |
1.44 |
51.4 |
-1.79 |
-0.26 |
21.1 |
82 |
6 |
1 |
5 |
5 |
2 |
0 |
0 |
|
 |
17 |
 |
1.52 |
1.53 |
53.0 |
-0.63 |
-0.07 |
15.6 |
83 |
7 |
2 |
1 |
2 |
2 |
1 |
0 |
|
 |
18 |
 |
1.67 |
1.83 |
58.2 |
-1.70 |
-0.22 |
27.4 |
84 |
7 |
3 |
3 |
3 |
2 |
0 |
0 |
|
 |
19 |
 |
1.65 |
1.86 |
64.0 |
-1.47 |
-0.25 |
24.8 |
81 |
10 |
4 |
2 |
5 |
2 |
0 |
0 |
|
 |
20 |
 |
1.42 |
1.42 |
64.0 |
-1.62 |
-0.33 |
23.9 |
82 |
12 |
4 |
2 |
2 |
2 |
1 |
0 |
|
 |
21 |
 |
1.66 |
1.83 |
65.3 |
-1.64 |
-0.25 |
23.3 |
81 |
9 |
3 |
5 |
6 |
3 |
1 |
0 |
|
 |
22 |
 |
2.74 |
3.88 |
66.4 |
-3.13 |
-0.59 |
31.7 |
83 |
9 |
4 |
5 |
2 |
1 |
0 |
0 |
|
 |
23 |
 |
1.97 |
1.97 |
67.6 |
-2.43 |
-0.37 |
32.9 |
83 |
12 |
4 |
4 |
3 |
2 |
0 |
0 |
|
 |
24 |
 |
2.02 |
2.02 |
73.3 |
-1.87 |
-0.34 |
28.6 |
81 |
14 |
5 |
3 |
6 |
2 |
0 |
0 |
|
 |
25 |
 |
1.92 |
1.92 |
74.8 |
-2.18 |
-0.38 |
27.4 |
81 |
14 |
4 |
6 |
6 |
3 |
1 |
0 |
|
 |
26 |
 |
1.17 |
1.82 |
76.1 |
-1.18 |
-0.49 |
13.9 |
83 |
4 |
4 |
6 |
4 |
2 |
2 |
0 |
0OR 501 E
|
 |
27 |
 |
1.18 |
1.80 |
84.3 |
-1.54 |
-0.59 |
16.3 |
85 |
6 |
5 |
9 |
3 |
2 |
2 |
0 |
0OR 501 E
|
 |
28 |
 |
1.38 |
1.66 |
86.9 |
-1.18 |
-0.42 |
10.8 |
76 |
6 |
3 |
3 |
3 |
2 |
5 |
0 |
|
 |
29 |
 |
1.42 |
1.42 |
110.1 |
-1.21 |
-0.30 |
16.1 |
77 |
13 |
4 |
2 |
4 |
3 |
6 |
0 |
|
 |
30 |
 |
1.43 |
1.65 |
113.7 |
-1.78 |
-0.31 |
22.4 |
78 |
13 |
4 |
4 |
5 |
3 |
5 |
0 |
|
 |
31 |
 |
1.39 |
1.68 |
120.9 |
-1.71 |
-0.32 |
20.3 |
77 |
15 |
4 |
6 |
8 |
4 |
6 |
0 |
|
 |
32 |
 |
1.61 |
1.75 |
124.7 |
-1.69 |
-0.53 |
17.3 |
82 |
6 |
5 |
6 |
3 |
1 |
5 |
0 |
|
 |
33 |
 |
1.53 |
1.54 |
124.4 |
-1.80 |
-0.40 |
21.8 |
81 |
14 |
5 |
8 |
7 |
2 |
5 |
0 |
|
 |
34 |
 |
1.25 |
2.02 |
31.8 |
-0.77 |
-0.44 |
6.5 |
85 |
1 |
1 |
5 |
3 |
1 |
2 |
0 |
0OR 501 B
|
 |
35 |
 |
1.22 |
1.84 |
33.6 |
-1.39 |
-0.60 |
10.0 |
88 |
4 |
1 |
5 |
2 |
1 |
1 |
0 |
0OR 501 B
|
 |
36 |
 |
2.08 |
2.33 |
50.0 |
-1.70 |
-0.35 |
24.3 |
75 |
8 |
3 |
3 |
3 |
2 |
0 |
0 |
|
 |
37 |
 |
2.02 |
2.02 |
67.1 |
-2.31 |
-0.29 |
30.6 |
81 |
11 |
4 |
4 |
5 |
2 |
1 |
0 |
|
 |
38 |
 |
1.83 |
2.55 |
73.9 |
-2.02 |
-0.31 |
28.6 |
79 |
15 |
6 |
4 |
7 |
3 |
1 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |